Understanding SIBO versus SIFO

07/26/2023

Within naturopathic medicine, gut health plays a pivotal role in overall well-being. Many individuals suffer from digestive disturbances, and three common conditions that often cause such issues are SIBO (Small Intestinal Bacterial Overgrowth) and SIFO (Small Intestinal Fungal Overgrowth), also known as Candida overgrowth. While their names might sound similar, these conditions have distinct characteristics and require different treatment approaches. In this blog post, we will explore the differences between SIBO and SIFO, as well as discuss natural strategies to restore balance in the gut.

SIBO (Small Intestinal Bacterial Overgrowth)

SIBO occurs when there is an excessive growth of bacteria in the small intestine, the part of the digestive tract where nutrient absorption takes place. Normally, the small intestine contains a lower number of bacteria compared to the large intestine. When these bacteria multiply uncontrollably in the small intestine, they can ferment carbohydrates and produce gas, leading to symptoms such as bloating, gas, diarrhea, constipation, and abdominal discomfort.

Potential Causes of SIBO:

  • Impaired motility of the small intestine
  • Structural abnormalities in the digestive tract
  • Low stomach acid levels
  • Use of certain medications
  • Prior gastrointestinal infections

SIFO (Small Intestinal Fungal Overgrowth)

SIFO is characterized by an overgrowth of fungal organisms, most commonly Candida species, in the small intestine. While Candida is a naturally occurring fungus in the gut, its overgrowth can lead to various health issues. Candida can attach to the intestinal lining, causing inflammation and compromising the gut barrier. The symptoms of SIFO often overlap with SIBO and may include bloating, gas, diarrhea, fatigue, and brain fog.

Potential Causes of SIFO:

  • Prolonged or frequent use of antibiotics
  • High sugar and carbohydrate diet
  • Weak immune system
  • Chronic stress
  • Oral contraceptive use

Distinguishing Factors and Diagnosis

Properly diagnosing these gut imbalances requires working with a qualified healthcare professional. Tests such as breath tests, stool analysis, and comprehensive health assessments are commonly used to identify the specific condition.

Treatment Approaches

SIBO Treatment:

  • Herbal antimicrobials to target bacterial overgrowth
  • Prokinetic agents to improve intestinal motility
  • Personalized diet plans, like the low FODMAP diet
  • Probiotics and prebiotics for gut restoration


SIFO Treatment:

  • Antifungal herbs or supplements to combat fungal overgrowth
  • Sugar-free, low-carb diet to starve the fungus
  • Probiotics with specific strains to balance the microbiome
  • Stress management techniques to boost immune function


SIBO and SIFO are distinct gut imbalances with overlapping symptoms, making accurate diagnosis crucial for effective treatment. Working with a naturopathic healthcare practitioner can help identify the root cause and design a personalized treatment plan to restore balance to the gut. Emphasizing a healthy diet, managing stress, and supporting the immune system are fundamental aspects of healing and maintaining a harmonious gut environment. Remember that healing the gut is a gradual process, and patience and consistency are key to achieving optimal gut health and overall well-being.